I will perform molecular docking, MD simulation, and admet analysis
molecular docking, MD simulation, drug discovery, GROMACS, AutoDock Vina, ADMET,
Over deze dienst
Hi there,
I'm a researcher specializing in bioinformatics and computational chemistry. If you need molecular docking, molecular dynamics (MD) simulations, or ADMET profiling for your research project, thesis, or paper, I can help you set it up and run it.
I run simulations using high-performance cloud GPUs (mainly GROMACS and AutoDock Vina) to deliver fast and accurate results.
What I can help with:
Molecular Docking: Protein-ligand docking (AutoDock Vina, PyRx), site-specific or blind docking, virtual screening, and pose visualization (PyMOL/Discovery Studio).
MD Simulations: System setup, equilibration, and production runs (10ns to 100ns+) in GROMACS or NAMD. I'll analyze RMSD, RMSF, Rg, SASA, hydrogen bonds, and MM-PBSA binding energy.
ADMET & Drug-likeness: SwissADME/pkCSM profiling and Lipinski's Rule of Five filters.
Homology Modeling: 3D protein structure modeling (SWISS-MODEL/Modeller) and validation.
What you'll receive:
A clean, professional results report with publication-ready figures.
All raw output files (.pdbqt, .gro, .xtc, .xvg, etc.) for your records.
A written methodology section that you can easily format for your paper or thesis.
Domein:
Deep learning
•
Overige
Programmeertaal:
Python
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R
•
SQL
•
Java
•
Amazon SageMaker
Technologie:
Python
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Java
•
R
•
PyTorch
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OpenNN
•
SQL

